This cluster uses modules to make software available on all nodes within these clusters. To point to all available modules use this command: ml use /mnt/it_software/easybuild/modules/all/
To list all available modules type: ml avail
To find more information on a particular software type: ml spider [module] (ie. ml spider abyss )
| Module & Version(s) | Description |
|---|---|
| ABySS: ABySS/2.2.5-foss-2020b | Assembly By Short Sequences - a de novo, parallel, paired-end sequence assembler |
| ACTC: ACTC/1.1-GCCcore-11.3.0 | ACTC converts independent triangles into triangle strips or fans. |
| ADMIXTURE: ADMIXTURE/1.3.0 | ADMIXTURE is a software tool for maximum likelihood estimation of individual ancestries from multilocus SNP genotype datasets. It uses the same statistical model as STRUCTURE but calculates estimates much more rapidly using a fast numerical optimization algorithm. |
| ATK: ATK/2.38.0-GCCcore-11.3.0, ATK/2.38.0-GCCcore-12.2.0 | ATK provides the set of accessibility interfaces that are implemented by other toolkits and applications. Using the ATK interfaces, accessibility tools have full access to view and control running applications. |
| AlphaFold: AlphaFold/2.3.4-foss-2022a-ColabFold | AlphaFold can predict protein structures with atomic accuracy even where no similar structure is known. This package of AlphaFold contains patches for ColabFold. |
| Anaconda2: Anaconda2/2019.10 | Built to complement the rich, open source Python community, the Anaconda platform provides an enterprise-ready data analytics platform that empowers companies to adopt a modern open data science analytics architecture. |
| Anaconda3: Anaconda3/2020.11, Anaconda3/2022.10 | Built to complement the rich, open source Python community, the Anaconda platform provides an enterprise-ready data analytics platform that empowers companies to adopt a modern open data science analytics architecture. |
| Armadillo: Armadillo/11.4.3-foss-2022b | Armadillo is an open-source C++ linear algebra library (matrix maths) aiming towards a good balance between speed and ease of use. Integer, floating point and complex numbers are supported, as well as a subset of trigonometric and statistics functions. |
| Autoconf: Autoconf/2.69-GCCcore-8.2.0, Autoconf/2.69-GCCcore-9.3.0, Autoconf/2.69-GCCcore-10.2.0, Autoconf/2.71-GCCcore-10.3.0, Autoconf/2.71-GCCcore-11.2.0, ... | Autoconf is an extensible package of M4 macros that produce shell scripts to automatically configure software source code packages. These scripts can adapt the packages to many kinds of UNIX-like systems without manual user intervention. Autoconf creates a configuration script for a package from a template file that lists the operating system features that the package can use, in the form of M4 macro calls. |
| Automake: Automake/1.16.1-GCCcore-8.2.0, Automake/1.16.1-GCCcore-9.3.0, Automake/1.16.2-GCCcore-10.2.0, Automake/1.16.3-GCCcore-10.3.0, Automake/1.16.4-GCCcore-11.2.0, ... | Automake: GNU Standards-compliant Makefile generator |
| Autotools: Autotools/20180311-GCCcore-8.2.0, Autotools/20180311-GCCcore-9.3.0, Autotools/20200321-GCCcore-10.2.0, Autotools/20210128-GCCcore-10.3.0, ... | This bundle collect the standard GNU build tools: Autoconf, Automake and libtool |
| BEDTools: BEDTools/2.30.0-GCC-12.2.0 | BEDTools: a powerful toolset for genome arithmetic. The BEDTools utilities allow one to address common genomics tasks such as finding feature overlaps and computing coverage. The utilities are largely based on four widely-used file formats: BED, GFF/GTF, VCF, and SAM/BAM. |
| BLAST+: BLAST+/2.13.0-gompi-2022a | Basic Local Alignment Search Tool, or BLAST, is an algorithm for comparing primary biological sequence information, such as the amino-acid sequences of different proteins or the nucleotides of DNA sequences. |
| BLIS: BLIS/0.8.1-GCC-10.3.0, BLIS/0.8.1-GCC-11.2.0, BLIS/0.9.0-GCC-11.3.0, BLIS/0.9.0-GCC-12.2.0, BLIS/0.9.0-GCC-12.3.0, BLIS/1.0-GCC-13.3.0 | BLIS is a portable software framework for instantiating high-performance BLAS-like dense linear algebra libraries. |
| BWA: BWA/0.7.17-GCCcore-12.2.0 | Burrows-Wheeler Aligner (BWA) is an efficient program that aligns relatively short nucleotide sequences against a long reference sequence such as the human genome. |
| BamTools: BamTools/2.5.2-GCC-12.2.0 | BamTools provides both a programmer's API and an end-user's toolkit for handling BAM files. |
| Bazel: Bazel/5.1.1-GCCcore-11.3.0 | Bazel is a build tool that builds code quickly and reliably. It is used to build the majority of Google's software. |
| Beast: Beast/2.7.3-GCC-11.3.0 | BEAST is a cross-platform program for Bayesian MCMC analysis of molecular sequences. It is entirely orientated towards rooted, time-measured phylogenies inferred using strict or relaxed molecular clock models. It can be used as a method of reconstructing phylogenies but is also a framework for testing evolutionary hypotheses without conditioning on a single tree topology. BEAST uses MCMC to average over tree space, so that each tree is weighted proportional to its posterior probability. |
| BeautifulSoup: BeautifulSoup/4.10.0-GCCcore-11.3.0 | Beautiful Soup is a Python library designed for quick turnaround projects like screen-scraping. |
| Bio-SearchIO-hmmer: Bio-SearchIO-hmmer/1.7.3-GCC-11.3.0 | Code to parse output from hmmsearch, hmmscan, phmmer and nhmmer, compatible with both version 2 and version 3 of the HMMER package from http://hmmer.org. |
| BioPerl: BioPerl/1.7.8-GCCcore-11.3.0 | Bioperl is the product of a community effort to produce Perl code which is useful in biology. Examples include Sequence objects, Alignment objects and database searching objects. |
| Biopython: Biopython/1.79-foss-2021b, Biopython/1.79-foss-2022a, Biopython/1.81-foss-2022b | Biopython is a set of freely available tools for biological computation written in Python by an international team of developers. It is a distributed collaborative effort to develop Python libraries and applications which address the needs of current and future work in bioinformatics. |
| Bison: Bison/3.0.4, Bison/3.0.5-GCCcore-8.2.0, Bison/3.0.5, Bison/3.5.3-GCCcore-9.3.0, Bison/3.7.1-GCCcore-10.2.0, Bison/3.7.6-GCCcore-10.3.0, Bison/3.7.6-GCCcore-11.2.0, ... | Bison is a general-purpose parser generator that converts an annotated context-free grammar into a deterministic LR or generalized LR (GLR) parser employing LALR(1) parser tables. |
| Boost: Boost/1.74.0-GCC-10.2.0, Boost/1.77.0-GCC-11.2.0, Boost/1.79.0-GCC-11.3.0, Boost/1.81.0-GCC-12.2.0, Boost/1.85.0-GCC-13.3.0 | Boost provides free peer-reviewed portable C++ source libraries. |
| Bottleneck: Bottleneck/1.3.2-foss-2020a-Python-3.8.2 | Fast NumPy array functions written in C |
| Bowtie2: Bowtie2/2.5.1-GCC-12.2.0 | Bowtie 2 is an ultrafast and memory-efficient tool for aligning sequencing reads to long reference sequences. It is particularly good at aligning reads of about 50 up to 100s or 1,000s of characters, and particularly good at aligning to relatively long (e.g. mammalian) genomes. Bowtie 2 indexes the genome with an FM Index to keep its memory footprint small: for the human genome, its memory footprint is typically around 3.2 GB. Bowtie 2 supports gapped, local, and paired-end alignment modes. |
| Brotli: Brotli/1.0.9-GCCcore-10.2.0, Brotli/1.0.9-GCCcore-10.3.0, Brotli/1.0.9-GCCcore-11.2.0, Brotli/1.0.9-GCCcore-11.3.0, Brotli/1.0.9-GCCcore-12.2.0, ... | Brotli is a generic-purpose lossless compression algorithm that compresses data using a combination of a modern variant of the LZ77 algorithm, Huffman coding and 2nd order context modeling, with a compression ratio comparable to the best currently available general-purpose compression methods. It is similar in speed with deflate but offers more dense compression. The specification of the Brotli Compressed Data Format is defined in RFC 7932. |
| CFITSIO: CFITSIO/4.2.0-GCCcore-12.2.0 | CFITSIO is a library of C and Fortran subroutines for reading and writing data files in FITS (Flexible Image Transport System) data format. |
| CMake: CMake/3.16.4-GCCcore-9.3.0, CMake/3.18.4-GCCcore-10.2.0, CMake/3.20.1-GCCcore-10.3.0, CMake/3.21.1-GCCcore-11.2.0, CMake/3.22.1-GCCcore-11.2.0, ... | CMake, the cross-platform, open-source build system. CMake is a family of tools designed to build, test and package software. |
| CUDA: CUDA/11.3.1, CUDA/11.7.0, CUDA/12.1.0, CUDA/12.2.0, CUDA/12.4.0 | CUDA (formerly Compute Unified Device Architecture) is a parallel computing platform and programming model created by NVIDIA and implemented by the graphics processing units (GPUs) that they produce. CUDA gives developers access to the virtual instruction set and memory of the parallel computational elements in CUDA GPUs. |
| CapnProto: CapnProto/0.9.1-GCCcore-10.3.0, CapnProto/0.9.1-GCCcore-11.2.0 | Cap’n Proto is an insanely fast data interchange format and capability-based RPC system. |
| Catch2: Catch2/2.13.10-GCCcore-13.3.0 | A modern, C++-native, header-only, test framework for unit-tests, TDD and BDD - using C++11, C++14, C++17 and later |
| CheckM: CheckM/1.2.2-foss-2022a | CheckM provides a set of tools for assessing the quality of genomes recovered from isolates, single cells, or metagenomes. |
| CheckM-Database: CheckM-Database/2015_01_16 | CheckM provides a set of tools for assessing the quality of genomes recovered from isolates, single cells, or metagenomes. This is the corresponding database. |
| Clang: Clang/13.0.1-GCCcore-11.3.0 | C, C++, Objective-C compiler, based on LLVM. Does not include C++ standard library -- use libstdc++ from GCC. |
| ColabFold: ColabFold/1.5.2-foss-2022a | Making protein folding accessible to all. Predict proteins structures both in google colab and on your machine. |
| Cython: Cython/3.0.10-GCCcore-13.3.0 | Cython is an optimising static compiler for both the Python programming language and the extended Cython programming language (based on Pyrex). |
| DB: DB/18.1.32-GCCcore-8.2.0, DB/18.1.32-GCCcore-9.3.0, DB/18.1.40-GCCcore-10.2.0, DB/18.1.40-GCCcore-10.3.0, DB/18.1.40-GCCcore-11.2.0, DB/18.1.40-GCCcore-11.3.0, ... | Berkeley DB enables the development of custom data management solutions, without the overhead traditionally associated with such custom projects. |
| DB_File: DB_File/1.858-GCCcore-11.3.0 | Perl5 access to Berkeley DB version 1.x. |
| DBus: DBus/1.13.18-GCCcore-10.2.0, DBus/1.15.2-GCCcore-12.2.0 | D-Bus is a message bus system, a simple way for applications to talk to one another. In addition to interprocess communication, D-Bus helps coordinate process lifecycle; it makes it simple and reliable to code a "single instance" application or daemon, and to launch applications and daemons on demand when their services are needed. |
| DendroPy: DendroPy/4.5.2-GCCcore-10.3.0, DendroPy/4.5.2-GCCcore-11.2.0, DendroPy/4.5.2-GCCcore-11.3.0 | A Python library for phylogenetics and phylogenetic computing: reading, writing, simulation, processing and manipulation of phylogenetic trees (phylogenies) and characters. |
| Doxygen: Doxygen/1.8.20-GCCcore-10.2.0, Doxygen/1.9.1-GCCcore-10.3.0, Doxygen/1.9.1-GCCcore-11.2.0, Doxygen/1.9.4-GCCcore-11.3.0, Doxygen/1.9.5-GCCcore-12.2.0, ... | Doxygen is a documentation system for C++, C, Java, Objective-C, Python, IDL (Corba and Microsoft flavors), Fortran, VHDL, PHP, C#, and to some extent D. |
| EMBOSS: EMBOSS/6.6.0-foss-2021b | EMBOSS is 'The European Molecular Biology Open Software Suite' . EMBOSS is a free Open Source software analysis package specially developed for the needs of the molecular biology (e.g. EMBnet) user community. |
| Eigen: Eigen/3.3.7-GCCcore-9.3.0, Eigen/3.3.8-GCCcore-10.2.0, Eigen/3.3.9-GCCcore-10.3.0, Eigen/3.3.9-GCCcore-11.2.0, Eigen/3.4.0-GCCcore-11.2.0, Eigen/3.4.0-GCCcore-11.3.0, ... | Eigen is a C++ template library for linear algebra: matrices, vectors, numerical solvers, and related algorithms. |
| FASTX-Toolkit: FASTX-Toolkit/0.0.14-GCC-11.3.0 | The FASTX-Toolkit is a collection of command line tools for Short-Reads FASTA/FASTQ files preprocessing. |
| FFTW: FFTW/3.3.8-gompi-2020a, FFTW/3.3.8-gompi-2020b, FFTW/3.3.9-gompi-2021a, FFTW/3.3.10-GCC-11.3.0, FFTW/3.3.10-GCC-12.2.0, FFTW/3.3.10-GCC-12.3.0, FFTW/3.3.10-GCC-13.3.0, ... | FFTW is a C subroutine library for computing the discrete Fourier transform (DFT) in one or more dimensions, of arbitrary input size, and of both real and complex data. |
| FFTW.MPI: FFTW.MPI/3.3.10-gompi-2022a, FFTW.MPI/3.3.10-gompi-2022b, FFTW.MPI/3.3.10-gompi-2023a | FFTW is a C subroutine library for computing the discrete Fourier transform (DFT) in one or more dimensions, of arbitrary input size, and of both real and complex data. |
| FFmpeg: FFmpeg/4.3.2-GCCcore-10.3.0, FFmpeg/4.3.2-GCCcore-11.2.0, FFmpeg/4.4.2-GCCcore-11.3.0 | A complete, cross-platform solution to record, convert and stream audio and video. |
| FLAC: FLAC/1.3.4-GCCcore-11.3.0, FLAC/1.4.2-GCCcore-12.2.0 | FLAC stands for Free Lossless Audio Codec, an audio format similar to MP3, but lossless, meaning that audio is compressed in FLAC without any loss in quality. |
| FLTK: FLTK/1.3.8-GCCcore-11.3.0 | FLTK is a cross-platform C++ GUI toolkit for UNIX/Linux (X11), Microsoft Windows, and MacOS X. FLTK provides modern GUI functionality without the bloat and supports 3D graphics via OpenGL and its built-in GLUT emulation. |
| FastANI: FastANI/1.33-GCC-10.3.0, FastANI/1.33-GCC-11.2.0 | FastANI is developed for fast alignment-free computation of whole-genome Average Nucleotide Identity (ANI). ANI is defined as mean nucleotide identity of orthologous gene pairs shared between two microbial genomes. FastANI supports pairwise comparison of both complete and draft genome assemblies. |
| FastQC: FastQC/0.11.9-Java-11 | FastQC is a quality control application for high throughput sequence data. It reads in sequence data in a variety of formats and can either provide an interactive application to review the results of several different QC checks, or create an HTML based report which can be integrated into a pipeline. |
| FastTree: FastTree/2.1.11-GCCcore-10.3.0, FastTree/2.1.11-GCCcore-11.2.0, FastTree/2.1.11-GCCcore-11.3.0 | FastTree infers approximately-maximum-likelihood phylogenetic trees from alignments of nucleotide or protein sequences. FastTree can handle alignments with up to a million of sequences in a reasonable amount of time and memory. |
| FlexiBLAS: FlexiBLAS/3.0.4-GCC-10.3.0, FlexiBLAS/3.0.4-GCC-11.2.0, FlexiBLAS/3.2.0-GCC-11.3.0, FlexiBLAS/3.2.1-GCC-12.2.0, FlexiBLAS/3.3.1-GCC-12.3.0, ... | FlexiBLAS is a wrapper library that enables the exchange of the BLAS and LAPACK implementation used by a program without recompiling or relinking it. |
| FriBidi: FriBidi/1.0.10-GCCcore-10.3.0, FriBidi/1.0.10-GCCcore-11.2.0, FriBidi/1.0.12-GCCcore-11.3.0, FriBidi/1.0.12-GCCcore-12.2.0 | The Free Implementation of the Unicode Bidirectional Algorithm. |
| GARLI: GARLI/2.01-gompi-2019a | GARLI, Genetic Algorithm for Rapid Likelihood Inference is a program for inferring phylogenetic trees. Using an approach similar to a classical genetic algorithm, it rapidly searches the space of evolutionary trees and model parameters to find the solution maximizing the likelihood score. It implements nucleotide, amino acid and codon-based models of sequence evolution, and runs on all platforms. |
| GATK: GATK/4.4.0.0-GCCcore-12.2.0-Java-17 | The Genome Analysis Toolkit or GATK is a software package developed at the Broad Institute to analyse next-generation resequencing data. The toolkit offers a wide variety of tools, with a primary focus on variant discovery and genotyping as well as strong emphasis on data quality assurance. Its robust architecture, powerful processing engine and high-performance computing features make it capable of taking on projects of any size. |
| GCC: GCC/8.2.0-2.31.1, GCC/9.3.0, GCC/10.2.0, GCC/10.3.0, GCC/11.2.0, GCC/11.3.0, GCC/12.2.0, GCC/12.3.0, GCC/13.3.0 | The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, as well as libraries for these languages (libstdc++, libgcj,...). |
| GCCcore: GCCcore/8.2.0, GCCcore/9.3.0, GCCcore/10.2.0, GCCcore/10.3.0, GCCcore/11.2.0, GCCcore/11.3.0, GCCcore/12.2.0, GCCcore/12.3.0, GCCcore/13.3.0 | The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, as well as libraries for these languages (libstdc++, libgcj,...). |
| GDAL: GDAL/3.5.0-foss-2022a | GDAL is a translator library for raster geospatial data formats that is released under an X/MIT style Open Source license by the Open Source Geospatial Foundation. As a library, it presents a single abstract data model to the calling application for all supported formats. It also comes with a variety of useful commandline utilities for data translation and processing. |
| GDGraph: GDGraph/1.56-GCCcore-11.3.0 | GDGraph is a Perl package to generate charts |
| GDRCopy: GDRCopy/2.3-GCCcore-11.3.0 | A low-latency GPU memory copy library based on NVIDIA GPUDirect RDMA technology. |
| GEOS: GEOS/3.10.3-GCC-11.3.0, GEOS/3.11.1-GCC-12.2.0 | GEOS (Geometry Engine - Open Source) is a C++ port of the Java Topology Suite (JTS) |
| GLM: GLM/0.9.9.8-GCCcore-10.2.0 | OpenGL Mathematics (GLM) is a header only C++ mathematics library for graphics software based on the OpenGL Shading Language (GLSL) specifications. |
| GLPK: GLPK/5.0-GCCcore-11.3.0, GLPK/5.0-GCCcore-12.2.0 | The GLPK (GNU Linear Programming Kit) package is intended for solving large-scale linear programming (LP), mixed integer programming (MIP), and other related problems. It is a set of routines written in ANSI C and organized in the form of a callable library. |
| GLib: GLib/2.66.1-GCCcore-10.2.0, GLib/2.72.1-GCCcore-11.3.0, GLib/2.75.0-GCCcore-12.2.0 | GLib is one of the base libraries of the GTK+ project |
| GMP: GMP/6.2.0-GCCcore-9.3.0, GMP/6.2.0-GCCcore-10.2.0, GMP/6.2.1-GCCcore-10.3.0, GMP/6.2.1-GCCcore-11.2.0, GMP/6.2.1-GCCcore-11.3.0, GMP/6.2.1-GCCcore-12.2.0 | GMP is a free library for arbitrary precision arithmetic, operating on signed integers, rational numbers, and floating point numbers. |
| GObject-Introspection: GObject-Introspection/1.72.0-GCCcore-11.3.0, GObject-Introspection/1.74.0-GCCcore-12.2.0 | GObject introspection is a middleware layer between C libraries (using GObject) and language bindings. The C library can be scanned at compile time and generate a metadata file, in addition to the actual native C library. Then at runtime, language bindings can read this metadata and automatically provide bindings to call into the C library. |
| GSL: GSL/2.7-GCC-10.3.0, GSL/2.7-GCC-11.2.0, GSL/2.7-GCC-11.3.0, GSL/2.7-GCC-12.2.0 | The GNU Scientific Library (GSL) is a numerical library for C and C++ programmers. The library provides a wide range of mathematical routines such as random number generators, special functions and least-squares fitting. |
| GTDB-Tk: GTDB-Tk/2.1.1-foss-2021b | A toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes. |
| GTK2: GTK2/2.24.33-GCCcore-11.3.0 | The GTK+ 2 package contains libraries used for creating graphical user interfaces for applications. |
| GTK3: GTK3/3.24.35-GCCcore-12.2.0 | GTK+ is the primary library used to construct user interfaces in GNOME. It provides all the user interface controls, or widgets, used in a common graphical application. Its object-oriented API allows you to construct user interfaces without dealing with the low-level details of drawing and device interaction. |
| Gdk-Pixbuf: Gdk-Pixbuf/2.42.8-GCCcore-11.3.0, Gdk-Pixbuf/2.42.10-GCCcore-12.2.0 | The Gdk Pixbuf is a toolkit for image loading and pixel buffer manipulation. It is used by GTK+ 2 and GTK+ 3 to load and manipulate images. In the past it was distributed as part of GTK+ 2 but it was split off into a separate package in preparation for the change to GTK+ 3. |
| Ghostscript: Ghostscript/9.56.1-GCCcore-11.3.0, Ghostscript/10.0.0-GCCcore-12.2.0 | Ghostscript is a versatile processor for PostScript data with the ability to render PostScript to different targets. It used to be part of the cups printing stack, but is no longer used for that. |
| GitPython: GitPython/3.1.24-GCCcore-11.2.0, GitPython/3.1.27-GCCcore-11.3.0 | GitPython is a python library used to interact with Git repositories |
| Go: Go/1.16.5 | Go is an open source programming language that makes it easy to build simple, reliable, and efficient software. |
| HDF: HDF/4.2.15-GCCcore-11.3.0, HDF/4.2.15-GCCcore-12.2.0 | HDF (also known as HDF4) is a library and multi-object file format for storing and managing data between machines. |
| HDF5: HDF5/1.10.7-gompi-2020b, HDF5/1.10.7-gompi-2021a, HDF5/1.12.1-gompi-2021b, HDF5/1.12.2-gompi-2022a, HDF5/1.14.0-gompi-2022b | HDF5 is a data model, library, and file format for storing and managing data. It supports an unlimited variety of datatypes, and is designed for flexible and efficient I/O and for high volume and complex data. |
| HH-suite: HH-suite/3.3.0-gompi-2022a | The HH-suite is an open-source software package for sensitive protein sequence searching based on the pairwise alignment of hidden Markov models (HMMs). |
| HMMER: HMMER/3.3.2-gompi-2021a, HMMER/3.3.2-gompi-2021b, HMMER/3.3.2-gompi-2022a, HMMER/3.3.2-gompi-2022b | HMMER is used for searching sequence databases for homologs of protein sequences, and for making protein sequence alignments. It implements methods using probabilistic models called profile hidden Markov models (profile HMMs). Compared to BLAST, FASTA, and other sequence alignment and database search tools based on older scoring methodology, HMMER aims to be significantly more accurate and more able to detect remote homologs because of the strength of its underlying mathematical models. In the past, this strength came at significant computational expense, but in the new HMMER3 project, HMMER is now essentially as fast as BLAST. |
| HTSlib: HTSlib/1.15.1-GCC-11.3.0, HTSlib/1.17-GCC-12.2.0 | A C library for reading/writing high-throughput sequencing data. This package includes the utilities bgzip and tabix |
| HarfBuzz: HarfBuzz/4.2.1-GCCcore-11.3.0, HarfBuzz/5.3.1-GCCcore-12.2.0 | HarfBuzz is an OpenType text shaping engine. |
| ICU: ICU/69.1-GCCcore-11.2.0, ICU/71.1-GCCcore-11.3.0, ICU/72.1-GCCcore-12.2.0, ICU/75.1-GCCcore-13.3.0 | ICU is a mature, widely used set of C/C++ and Java libraries providing Unicode and Globalization support for software applications. |
| IPython: IPython/7.26.0-GCCcore-11.2.0, IPython/8.5.0-GCCcore-11.3.0 | IPython provides a rich architecture for interactive computing with: Powerful interactive shells (terminal and Qt-based). A browser-based notebook with support for code, text, mathematical expressions, inline plots and other rich media. Support for interactive data visualization and use of GUI toolkits. Flexible, embeddable interpreters to load into your own projects. Easy to use, high performance tools for parallel computing. |
| ISA-L: ISA-L/2.30.0-GCCcore-12.2.0 | Intelligent Storage Acceleration Library |
| ImageMagick: ImageMagick/7.1.0-37-GCCcore-11.3.0, ImageMagick/7.1.0-53-GCCcore-12.2.0 | ImageMagick is a software suite to create, edit, compose, or convert bitmap images |
| Imath: Imath/3.1.5-GCCcore-11.3.0, Imath/3.1.6-GCCcore-12.2.0 | Imath is a C++ and python library of 2D and 3D vector, matrix, and math operations for computer graphics |
| JasPer: JasPer/2.0.24-GCCcore-10.2.0, JasPer/2.0.33-GCCcore-11.3.0, JasPer/4.0.0-GCCcore-12.2.0 | The JasPer Project is an open-source initiative to provide a free software-based reference implementation of the codec specified in the JPEG-2000 Part-1 standard. |
| Java: Java/11.0.18, Java/17.0.6 | Java Platform, Standard Edition (Java SE) lets you develop and deploy Java applications on desktops and servers. |
| JsonCpp: JsonCpp/1.9.5-GCCcore-11.3.0 | JsonCpp is a C++ library that allows manipulating JSON values, including serialization and deserialization to and from strings. It can also preserve existing comment in unserialization/serialization steps, making it a convenient format to store user input files. |
| Judy: Judy/1.0.5-GCCcore-11.2.0 | A C library that implements a dynamic array. |
| Kalign: Kalign/3.3.5-GCCcore-11.3.0 | Kalign is a fast multiple sequence alignment program for biological sequences. |
| Kent_tools: Kent_tools/422-GCC-11.2.0 | Kent utilities: collection of tools used by the UCSC genome browser. |
| Kraken2: Kraken2/2.1.2-gompi-2022a | Kraken is a system for assigning taxonomic labels to short DNA sequences, usually obtained through metagenomic studies. Previous attempts by other bioinformatics software to accomplish this task have often used sequence alignment or machine learning techniques that were quite slow, leading to the development of less sensitive but much faster abundance estimation programs. Kraken aims to achieve high sensitivity and high speed by utilizing exact alignments of k-mers and a novel classification algorithm. |
| LAME: LAME/3.100-GCCcore-10.3.0, LAME/3.100-GCCcore-11.2.0, LAME/3.100-GCCcore-11.3.0, LAME/3.100-GCCcore-12.2.0 | LAME is a high quality MPEG Audio Layer III (MP3) encoder licensed under the LGPL. |
| LAMMPS: LAMMPS/23Jun2022-foss-2021b-kokkos | LAMMPS is a classical molecular dynamics code, and an acronym for Large-scale Atomic/Molecular Massively Parallel Simulator. LAMMPS has potentials for solid-state materials (metals, semiconductors) and soft matter (biomolecules, polymers) and coarse-grained or mesoscopic systems. It can be used to model atoms or, more generically, as a parallel particle simulator at the atomic, meso, or continuum scale. LAMMPS runs on single processors or in parallel using message-passing techniques and a spatial-decomposition of the simulation domain. The code is designed to be easy to modify or extend with new functionality. |
| LLVM: LLVM/11.0.0-GCCcore-10.2.0, LLVM/12.0.1-GCCcore-11.2.0, LLVM/14.0.3-GCCcore-11.3.0, LLVM/15.0.5-GCCcore-12.2.0 | The LLVM Core libraries provide a modern source- and target-independent optimizer, along with code generation support for many popular CPUs (as well as some less common ones!) These libraries are built around a well specified code representation known as the LLVM intermediate representation ("LLVM IR"). The LLVM Core libraries are well documented, and it is particularly easy to invent your own language (or port an existing compiler) to use LLVM as an optimizer and code generator. |
| LMDB: LMDB/0.9.29-GCCcore-11.3.0 | LMDB is a fast, memory-efficient database. With memory-mapped files, it has the read performance of a pure in-memory database while retaining the persistence of standard disk-based databases. |
| LZO: LZO/2.10-GCCcore-11.2.0 | Portable lossless data compression library |
| LibTIFF: LibTIFF/4.2.0-GCCcore-10.3.0, LibTIFF/4.3.0-GCCcore-11.2.0, LibTIFF/4.3.0-GCCcore-11.3.0, LibTIFF/4.4.0-GCCcore-12.2.0, LibTIFF/4.6.0-GCCcore-13.3.0 | tiff: Library and tools for reading and writing TIFF data files |
| LittleCMS: LittleCMS/2.13.1-GCCcore-11.3.0, LittleCMS/2.14-GCCcore-12.2.0, LittleCMS/2.16-GCCcore-13.3.0 | Little CMS intends to be an OPEN SOURCE small-footprint color management engine, with special focus on accuracy and performance. |
| M4: M4/1.4.17, M4/1.4.18-GCCcore-8.2.0, M4/1.4.18-GCCcore-9.3.0, M4/1.4.18-GCCcore-10.2.0, M4/1.4.18-GCCcore-10.3.0, M4/1.4.18, M4/1.4.19-GCCcore-11.2.0, ... | GNU M4 is an implementation of the traditional Unix macro processor. It is mostly SVR4 compatible although it has some extensions (for example, handling more than 9 positional parameters to macros). GNU M4 also has built-in functions for including files, running shell commands, doing arithmetic, etc. |
| MAFFT: MAFFT/7.490-gompi-2021b-with-extensions | MAFFT is a multiple sequence alignment program for unix-like operating systems. It offers a range of multiple alignment methods, L-INS-i (accurate; for alignment of <~200 sequences), FFT-NS-2 (fast; for alignment of <~30,000 sequences), etc. |
| MEGAHIT: MEGAHIT/1.2.9-GCCcore-11.3.0 | An ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph |
| MPC: MPC/1.2.1-GCCcore-11.3.0 | Gnu Mpc is a C library for the arithmetic of complex numbers with arbitrarily high precision and correct rounding of the result. It extends the principles of the IEEE-754 standard for fixed precision real floating point numbers to complex numbers, providing well-defined semantics for every operation. At the same time, speed of operation at high precision is a major design goal. |
| MPFR: MPFR/4.1.0-GCCcore-10.3.0, MPFR/4.1.0-GCCcore-11.3.0, MPFR/4.2.0-GCCcore-12.2.0 | The MPFR library is a C library for multiple-precision floating-point computations with correct rounding. |
| MUSCLE: MUSCLE/5.1.0-GCCcore-11.3.0 | MUSCLE is one of the best-performing multiple alignment programs according to published benchmark tests, with accuracy and speed that are consistently better than CLUSTALW. MUSCLE can align hundreds of sequences in seconds. Most users learn everything they need to know about MUSCLE in a few minutes-only a handful of command-line options are needed to perform common alignment tasks. |
| Mako: Mako/1.1.3-GCCcore-10.2.0, Mako/1.1.4-GCCcore-11.2.0, Mako/1.2.0-GCCcore-11.3.0, Mako/1.2.4-GCCcore-12.2.0 | A super-fast templating language that borrows the best ideas from the existing templating languages |
| MariaDB: MariaDB/10.6.4-GCC-11.2.0 | MariaDB is an enhanced, drop-in replacement for MySQL. Included engines: myISAM, Aria, InnoDB, RocksDB, TokuDB, OQGraph, Mroonga. |
| Mash: Mash/2.3-GCC-10.3.0, Mash/2.3-GCC-11.2.0 | Fast genome and metagenome distance estimation using MinHash |
| Mesa: Mesa/20.2.1-GCCcore-10.2.0, Mesa/21.1.7-GCCcore-11.2.0, Mesa/22.0.3-GCCcore-11.3.0, Mesa/22.2.4-GCCcore-12.2.0 | Mesa is an open-source implementation of the OpenGL specification - a system for rendering interactive 3D graphics. |
| Meson: Meson/0.55.3-GCCcore-10.2.0, Meson/0.58.0-GCCcore-10.3.0, Meson/0.58.2-GCCcore-11.2.0, Meson/0.62.1-GCCcore-11.3.0, Meson/0.64.0-GCCcore-12.2.0, ... | Meson is a cross-platform build system designed to be both as fast and as user friendly as possible. |
| MetaBAT: MetaBAT/2.15-gompi-2021b | An efficient tool for accurately reconstructing single genomes from complex microbial communities |
| Miniconda3: Miniconda3/22.11.1-1 | Miniconda is a free minimal installer for conda. It is a small, bootstrap version of Anaconda that includes only conda, Python, the packages they depend on, and a small number of other useful packages. |
| NAMD: NAMD/2.14-foss-2022a-mpi | NAMD is a parallel molecular dynamics code designed for high-performance simulation of large biomolecular systems. |
| NASM: NASM/2.15.05-GCCcore-10.2.0, NASM/2.15.05-GCCcore-10.3.0, NASM/2.15.05-GCCcore-11.2.0, NASM/2.15.05-GCCcore-11.3.0, NASM/2.15.05-GCCcore-12.2.0, ... | NASM: General-purpose x86 assembler |
| NCCL: NCCL/2.12.12-GCCcore-11.3.0-CUDA-11.7.0 | The NVIDIA Collective Communications Library (NCCL) implements multi-GPU and multi-node collective communication primitives that are performance optimized for NVIDIA GPUs. |
| NEXUS-CL: NEXUS-CL/2.1.18-GCC-8.2.0-2.31.1 | The NEXUS Class Library is a C++ library for parsing NEXUS files. |
| NLopt: NLopt/2.7.1-GCCcore-11.3.0, NLopt/2.7.1-GCCcore-12.2.0 | NLopt is a free/open-source library for nonlinear optimization, providing a common interface for a number of different free optimization routines available online as well as original implementations of various other algorithms. |
| NSPR: NSPR/4.29-GCCcore-10.2.0 | Netscape Portable Runtime (NSPR) provides a platform-neutral API for system level and libc-like functions. |
| NSS: NSS/3.57-GCCcore-10.2.0 | Network Security Services (NSS) is a set of libraries designed to support cross-platform development of security-enabled client and server applications. |
| Ninja: Ninja/1.10.1-GCCcore-10.2.0, Ninja/1.10.2-GCCcore-10.3.0, Ninja/1.10.2-GCCcore-11.2.0, Ninja/1.10.2-GCCcore-11.3.0, Ninja/1.11.1-GCCcore-12.2.0, ... | Ninja is a small build system with a focus on speed. |
| OpenBLAS: OpenBLAS/0.3.9-GCC-9.3.0, OpenBLAS/0.3.12-GCC-10.2.0, OpenBLAS/0.3.15-GCC-10.3.0, OpenBLAS/0.3.18-GCC-11.2.0, OpenBLAS/0.3.20-GCC-11.3.0, OpenBLAS/0.3.21-GCC-12.2.0, ... | OpenBLAS is an optimized BLAS library based on GotoBLAS2 1.13 BSD version. |
| OpenEXR: OpenEXR/3.1.5-GCCcore-11.3.0, OpenEXR/3.1.5-GCCcore-12.2.0 | OpenEXR is a high dynamic-range (HDR) image file format developed by Industrial Light & Magic for use in computer imaging applications |
| OpenJPEG: OpenJPEG/2.5.0-GCCcore-11.3.0, OpenJPEG/2.5.2-GCCcore-13.3.0 | OpenJPEG is an open-source JPEG 2000 codec written in C language. It has been developed in order to promote the use of JPEG 2000, a still-image compression standard from the Joint Photographic Experts Group (JPEG). Since may 2015, it is officially recognized by ISO/IEC and ITU-T as a JPEG 2000 Reference Software. |
| OpenMM: OpenMM/8.0.0-foss-2022a | OpenMM is a toolkit for molecular simulation. |
| OpenMPI: OpenMPI/3.1.3-GCC-8.2.0-2.31.1, OpenMPI/4.0.3-GCC-9.3.0, OpenMPI/4.0.5-GCC-10.2.0, OpenMPI/4.1.1-GCC-10.3.0, OpenMPI/4.1.1-GCC-11.2.0, OpenMPI/4.1.4-GCC-11.3.0, ... | The Open MPI Project is an open source MPI-3 implementation. |
| OpenPGM: OpenPGM/5.2.122-GCCcore-11.2.0, OpenPGM/5.2.122-GCCcore-11.3.0 | OpenPGM is an open source implementation of the Pragmatic General Multicast (PGM) specification in RFC 3208 available at www.ietf.org. PGM is a reliable and scalable multicast protocol that enables receivers to detect loss, request retransmission of lost data, or notify an application of unrecoverable loss. PGM is a receiver-reliable protocol, which means the receiver is responsible for ensuring all data is received, absolving the sender of reception responsibility. |
| OpenSSL: OpenSSL/1.1, OpenSSL/3 | The OpenSSL Project is a collaborative effort to develop a robust, commercial-grade, full-featured, and Open Source toolchain implementing the Secure Sockets Layer (SSL v2/v3) and Transport Layer Security (TLS v1) protocols as well as a full-strength general purpose cryptography library. |
| PCRE: PCRE/8.44-GCCcore-10.2.0, PCRE/8.45-GCCcore-11.2.0, PCRE/8.45-GCCcore-11.3.0, PCRE/8.45-GCCcore-12.2.0 | The PCRE library is a set of functions that implement regular expression pattern matching using the same syntax and semantics as Perl 5. |
| PCRE2: PCRE2/10.35-GCCcore-10.2.0, PCRE2/10.37-GCCcore-11.2.0, PCRE2/10.40-GCCcore-11.3.0, PCRE2/10.40-GCCcore-12.2.0 | The PCRE library is a set of functions that implement regular expression pattern matching using the same syntax and semantics as Perl 5. |
| PLUMED: PLUMED/2.7.3-foss-2021b, PLUMED/2.8.1-foss-2022a | PLUMED is an open source library for free energy calculations in molecular systems which works together with some of the most popular molecular dynamics engines. Free energy calculations can be performed as a function of many order parameters with a particular focus on biological problems, using state of the art methods such as metadynamics, umbrella sampling and Jarzynski-equation based steered MD. The software, written in C++, can be easily interfaced with both fortran and C/C++ codes. |
| PMIx: PMIx/3.1.5-GCCcore-9.3.0, PMIx/3.1.5-GCCcore-10.2.0, PMIx/3.2.3-GCCcore-10.3.0, PMIx/4.1.0-GCCcore-11.2.0, PMIx/4.1.2-GCCcore-11.3.0, PMIx/4.2.2-GCCcore-12.2.0, ... | Process Management for Exascale Environments PMI Exascale (PMIx) represents an attempt to provide an extended version of the PMI standard specifically designed to support clusters up to and including exascale sizes. The overall objective of the project is not to branch the existing pseudo-standard definitions - in fact, PMIx fully supports both of the existing PMI-1 and PMI-2 APIs - but rather to (a) augment and extend those APIs to eliminate some current restrictions that impact scalability, and (b) provide a reference implementation of the PMI-server that demonstrates the desired level of scalability. |
| POV-Ray: POV-Ray/3.7.0.10-GCC-11.3.0 | The Persistence of Vision Raytracer, or POV-Ray, is a ray tracing program which generates images from a text-based scene description, and is available for a variety of computer platforms. POV-Ray is a high-quality, Free Software tool for creating stunning three-dimensional graphics. The source code is available for those wanting to do their own ports. |
| PROJ: PROJ/9.0.0-GCCcore-11.3.0, PROJ/9.1.1-GCCcore-12.2.0 | Program proj is a standard Unix filter function which converts geographic longitude and latitude coordinates into cartesian coordinates |
| Pango: Pango/1.50.7-GCCcore-11.3.0, Pango/1.50.12-GCCcore-12.2.0 | Pango is a library for laying out and rendering of text, with an emphasis on internationalization. Pango can be used anywhere that text layout is needed, though most of the work on Pango so far has been done in the context of the GTK+ widget toolkit. Pango forms the core of text and font handling for GTK+-2.x. |
| Perl: Perl/5.28.1-GCCcore-8.2.0, Perl/5.30.2-GCCcore-9.3.0-minimal, Perl/5.30.2-GCCcore-9.3.0, Perl/5.32.0-GCCcore-10.2.0-minimal, Perl/5.32.0-GCCcore-10.2.0, ... | Larry Wall's Practical Extraction and Report Language |
| Perl-bundle-CPAN: Perl-bundle-CPAN/5.38.2-GCCcore-13.3.0 | A set of common packages from CPAN |
| Pillow: Pillow/8.2.0-GCCcore-10.3.0, Pillow/8.3.2-GCCcore-11.2.0, Pillow/9.1.1-GCCcore-11.3.0, Pillow/9.4.0-GCCcore-12.2.0 | Pillow is the 'friendly PIL fork' by Alex Clark and Contributors. PIL is the Python Imaging Library by Fredrik Lundh and Contributors. |
| Pillow-SIMD: Pillow-SIMD/10.4.0-GCCcore-13.3.0 | Pillow is the 'friendly PIL fork' by Alex Clark and Contributors. PIL is the Python Imaging Library by Fredrik Lundh and Contributors. |
| PnetCDF: PnetCDF/1.12.3-gompi-2021b | Parallel netCDF: A Parallel I/O Library for NetCDF File Access |
| PyCharm: PyCharm/2022.3.2 | PyCharm Community Edition: Python IDE for Professional Developers |
| PyMOL: PyMOL/2.5.0-foss-2020b | PyMOL is a Python-enhanced molecular graphics tool. It excels at 3D visualization of proteins, small molecules, density, surfaces, and trajectories. It also includes molecular editing, ray tracing, and movies. Open Source PyMOL is free to everyone! |
| PyQt5: PyQt5/5.15.1-GCCcore-10.2.0 | PyQt5 is a set of Python bindings for v5 of the Qt application framework from The Qt Company. This bundle includes PyQtWebEngine, a set of Python bindings for The Qt Company’s Qt WebEngine framework. |
| PyTorch: PyTorch/2.1.2-foss-2022a | Tensors and Dynamic neural networks in Python with strong GPU acceleration. PyTorch is a deep learning framework that puts Python first. |
| PyYAML: PyYAML/5.4.1-GCCcore-10.3.0, PyYAML/5.4.1-GCCcore-11.2.0, PyYAML/6.0-GCCcore-11.3.0 | PyYAML is a YAML parser and emitter for the Python programming language. |
| Pysam: Pysam/0.17.0-GCC-11.2.0, Pysam/0.19.1-GCC-11.3.0 | Pysam is a python module for reading and manipulating Samfiles. It's a lightweight wrapper of the samtools C-API. Pysam also includes an interface for tabix. |
| Python: Python/2.7.18-GCCcore-10.2.0, Python/3.8.2-GCCcore-9.3.0, Python/3.8.6-GCCcore-10.2.0, Python/3.9.5-GCCcore-10.3.0-bare, Python/3.9.5-GCCcore-10.3.0, ... | Python is a programming language that lets you work more quickly and integrate your systems more effectively. |
| Python-bundle-PyPI: Python-bundle-PyPI/2024.06-GCCcore-13.3.0 | Bundle of Python packages from PyPI |
| QIIME2: QIIME2/2022.11 | QIIME is an open-source bioinformatics pipeline for performing microbiome analysis from raw DNA sequencing data. |
| Qhull: Qhull/2020.2-GCCcore-11.2.0, Qhull/2020.2-GCCcore-11.3.0, Qhull/2020.2-GCCcore-12.2.0, Qhull/2020.2-GCCcore-13.3.0 | Qhull computes the convex hull, Delaunay triangulation, Voronoi diagram, halfspace intersection about a point, furthest-site Delaunay triangulation, and furthest-site Voronoi diagram. The source code runs in 2-d, 3-d, 4-d, and higher dimensions. Qhull implements the Quickhull algorithm for computing the convex hull. |
| Qt5: Qt5/5.14.2-GCCcore-10.2.0 | Qt is a comprehensive cross-platform C++ application framework. |
| R: R/4.2.1-foss-2022a | R is a free software environment for statistical computing and graphics. |
| RAxML: RAxML/8.2.12-GCC-10.2.0-pthreads-avx2 | RAxML search algorithm for maximum likelihood based inference of phylogenetic trees. |
| RAxML-NG: RAxML-NG/1.1.0-GCC-11.2.0 | RAxML-NG is a phylogenetic tree inference tool which uses maximum-likelihood (ML) optimality criterion. Its search heuristic is based on iteratively performing a series of Subtree Pruning and Regrafting (SPR) moves, which allows to quickly navigate to the best-known ML tree. |
| Rust: Rust/1.52.1-GCCcore-10.3.0, Rust/1.54.0-GCCcore-11.2.0, Rust/1.60.0-GCCcore-11.3.0, Rust/1.65.0-GCCcore-12.2.0, Rust/1.78.0-GCCcore-13.3.0 | Rust is a systems programming language that runs blazingly fast, prevents segfaults, and guarantees thread safety. |
| SAMtools: SAMtools/1.14-GCC-11.2.0, SAMtools/1.17-GCC-12.2.0 | SAM Tools provide various utilities for manipulating alignments in the SAM format, including sorting, merging, indexing and generating alignments in a per-position format. |
| SDL2: SDL2/2.0.22-GCCcore-11.3.0 | SDL: Simple DirectMedia Layer, a cross-platform multimedia library |
| SPAdes: SPAdes/3.15.5-GCC-11.3.0 | Genome assembler for single-cell and isolates data sets |
| SQLite: SQLite/3.31.1-GCCcore-9.3.0, SQLite/3.33.0-GCCcore-10.2.0, SQLite/3.35.4-GCCcore-10.3.0, SQLite/3.36-GCCcore-11.2.0, SQLite/3.38.3-GCCcore-11.3.0, ... | SQLite: SQL Database Engine in a C Library |
| SRA-Toolkit: SRA-Toolkit/3.0.5-gompi-2021a | The SRA Toolkit, and the source-code SRA System Development Kit (SDK), will allow you to programmatically access data housed within SRA and convert it from the SRA format |
| STAR: STAR/2.7.10b-GCC-12.2.0 | STAR aligns RNA-seq reads to a reference genome using uncompressed suffix arrays. |
| SWIG: SWIG/4.0.2-GCCcore-11.3.0 | SWIG is a software development tool that connects programs written in C and C++ with a variety of high-level programming languages. |
| ScaFaCoS: ScaFaCoS/1.0.1-foss-2021b, ScaFaCoS/1.0.4-foss-2022a | ScaFaCoS is a library of scalable fast coulomb solvers. |
| ScaLAPACK: ScaLAPACK/2.1.0-gompi-2020a, ScaLAPACK/2.1.0-gompi-2020b, ScaLAPACK/2.1.0-gompi-2021a-fb, ScaLAPACK/2.1.0-gompi-2021b-fb, ScaLAPACK/2.2.0-gompi-2022a-fb, ... | The ScaLAPACK (or Scalable LAPACK) library includes a subset of LAPACK routines redesigned for distributed memory MIMD parallel computers. |
| SciPy-bundle: SciPy-bundle/2020.03-foss-2020a-Python-3.8.2, SciPy-bundle/2020.11-foss-2020b, SciPy-bundle/2021.05-foss-2021a, SciPy-bundle/2021.10-foss-2021b, ... | Bundle of Python packages for scientific software |
| Seaborn: Seaborn/0.12.2-foss-2022b | Seaborn is a Python visualization library based on matplotlib. It provides a high-level interface for drawing attractive statistical graphics. |
| Szip: Szip/2.1.1-GCCcore-10.2.0, Szip/2.1.1-GCCcore-10.3.0, Szip/2.1.1-GCCcore-11.2.0, Szip/2.1.1-GCCcore-11.3.0, Szip/2.1.1-GCCcore-12.2.0 | Szip compression software, providing lossless compression of scientific data |
| Tcl: Tcl/8.6.10-GCCcore-9.3.0, Tcl/8.6.10-GCCcore-10.2.0, Tcl/8.6.11-GCCcore-10.3.0, Tcl/8.6.11-GCCcore-11.2.0, Tcl/8.6.12-GCCcore-11.3.0, Tcl/8.6.12-GCCcore-12.2.0, ... | Tcl (Tool Command Language) is a very powerful but easy to learn dynamic programming language, suitable for a very wide range of uses, including web and desktop applications, networking, administration, testing and many more. |
| TensorFlow: TensorFlow/2.11.0-foss-2022a | An open-source software library for Machine Intelligence |
| Tk: Tk/8.6.10-GCCcore-10.2.0, Tk/8.6.11-GCCcore-11.2.0, Tk/8.6.12-GCCcore-11.3.0, Tk/8.6.12-GCCcore-12.2.0 | Tk is an open source, cross-platform widget toolchain that provides a library of basic elements for building a graphical user interface (GUI) in many different programming languages. |
| Tkinter: Tkinter/3.8.6-GCCcore-10.2.0, Tkinter/3.9.6-GCCcore-11.2.0, Tkinter/3.10.4-GCCcore-11.3.0, Tkinter/3.10.8-GCCcore-12.2.0 | Tkinter module, built with the Python buildsystem |
| Trimmomatic: Trimmomatic/0.39-Java-17 | Trimmomatic performs a variety of useful trimming tasks for illumina paired-end and single ended data.The selection of trimming steps and their associated parameters are supplied on the command line. |
| UCC: UCC/1.0.0-GCCcore-11.3.0, UCC/1.1.0-GCCcore-12.2.0, UCC/1.2.0-GCCcore-12.3.0 | UCC (Unified Collective Communication) is a collective communication operations API and library that is flexible, complete, and feature-rich for current and emerging programming models and runtimes. |
| UCX: UCX/1.8.0-GCCcore-9.3.0, UCX/1.9.0-GCCcore-10.2.0, UCX/1.10.0-GCCcore-10.3.0, UCX/1.11.2-GCCcore-11.2.0, UCX/1.12.1-GCCcore-11.3.0, UCX/1.13.1-GCCcore-12.2.0, ... | Unified Communication X An open-source production grade communication framework for data centric and high-performance applications |
| UCX-CUDA: UCX-CUDA/1.12.1-GCCcore-11.3.0-CUDA-11.7.0 | Unified Communication X An open-source production grade communication framework for data centric and high-performance applications This module adds the UCX CUDA support. |
| UDUNITS: UDUNITS/2.2.28-GCCcore-11.3.0, UDUNITS/2.2.28-GCCcore-12.2.0 | UDUNITS supports conversion of unit specifications between formatted and binary forms, arithmetic manipulation of units, and conversion of values between compatible scales of measurement. |
| UShER: UShER/0.5.0-gompi-2021b | UShER is now a package consisting of a family of programs for rapid phylogenetic analyses, particularly suitable for the SARS-CoV-2 genomes. |
| UnZip: UnZip/6.0-GCCcore-9.3.0, UnZip/6.0-GCCcore-10.2.0, UnZip/6.0-GCCcore-10.3.0, UnZip/6.0-GCCcore-11.2.0, UnZip/6.0-GCCcore-11.3.0, UnZip/6.0-GCCcore-12.2.0, ... | UnZip is an extraction utility for archives compressed in .zip format (also called "zipfiles"). Although highly compatible both with PKWARE's PKZIP and PKUNZIP utilities for MS-DOS and with Info-ZIP's own Zip program, our primary objectives have been portability and non-MSDOS functionality. |
| VMD: VMD/1.9.4a57-foss-2022a | VMD is a molecular visualization program for displaying, animating, and analyzing large biomolecular systems using 3-D graphics and built-in scripting. |
| VTK: VTK/9.1.0-foss-2021b, VTK/9.2.2-foss-2022a | The Visualization Toolkit (VTK) is an open-source, freely available software system for 3D computer graphics, image processing and visualization. VTK consists of a C++ class library and several interpreted interface layers including Tcl/Tk, Java, and Python. VTK supports a wide variety of visualization algorithms including: scalar, vector, tensor, texture, and volumetric methods; and advanced modeling techniques such as: implicit modeling, polygon reduction, mesh smoothing, cutting, contouring, and Delaunay triangulation. |
| Voro++: Voro++/0.4.6-GCCcore-11.2.0, Voro++/0.4.6-GCCcore-11.3.0 | Voro++ is a software library for carrying out three-dimensional computations of the Voronoi tessellation. A distinguishing feature of the Voro++ library is that it carries out cell-based calculations, computing the Voronoi cell for each particle individually. It is particularly well-suited for applications that rely on cell-based statistics, where features of Voronoi cells (eg. volume, centroid, number of faces) can be used to analyze a system of particles. |
| X11: X11/20201008-GCCcore-10.2.0, X11/20210518-GCCcore-10.3.0, X11/20210802-GCCcore-11.2.0, X11/20220504-GCCcore-11.3.0, X11/20221110-GCCcore-12.2.0 | The X Window System (X11) is a windowing system for bitmap displays |
| XML-LibXML: XML-LibXML/2.0207-GCCcore-11.3.0 | Perl binding for libxml2 |
| XZ: XZ/5.2.4-GCCcore-8.2.0, XZ/5.2.5-GCCcore-9.3.0, XZ/5.2.5-GCCcore-10.2.0, XZ/5.2.5-GCCcore-10.3.0, XZ/5.2.5-GCCcore-11.2.0, XZ/5.2.5-GCCcore-11.3.0, ... | xz: XZ utilities |
| Xerces-C++: Xerces-C++/3.2.4-GCCcore-12.2.0 | Xerces-C++ is a validating XML parser written in a portable subset of C++. Xerces-C++ makes it easy to give your application the ability to read and write XML data. A shared library is provided for parsing, generating, manipulating, and validating XML documents using the DOM, SAX, and SAX2 APIs. |
| Xvfb: Xvfb/21.1.3-GCCcore-11.3.0, Xvfb/21.1.6-GCCcore-12.2.0 | Xvfb is an X server that can run on machines with no display hardware and no physical input devices. It emulates a dumb framebuffer using virtual memory. |
| Yasm: Yasm/1.3.0-GCCcore-10.3.0, Yasm/1.3.0-GCCcore-11.2.0, Yasm/1.3.0-GCCcore-11.3.0 | Yasm: Complete rewrite of the NASM assembler with BSD license |
| Z3: Z3/4.10.2-GCCcore-11.3.0-Python-3.10.4, Z3/4.10.2-GCCcore-11.3.0 | Z3 is a theorem prover from Microsoft Research with support for bitvectors, booleans, arrays, floating point numbers, strings, and other data types. This module includes z3_solver, the Python interface of Z3. |
| ZeroMQ: ZeroMQ/4.3.4-GCCcore-11.2.0, ZeroMQ/4.3.4-GCCcore-11.3.0 | ZeroMQ looks like an embeddable networking library but acts like a concurrency framework. It gives you sockets that carry atomic messages across various transports like in-process, inter-process, TCP, and multicast. You can connect sockets N-to-N with patterns like fanout, pub-sub, task distribution, and request-reply. It's fast enough to be the fabric for clustered products. Its asynchronous I/O model gives you scalable multicore applications, built as asynchronous message-processing tasks. It has a score of language APIs and runs on most operating systems. |
| Zip: Zip/3.0-GCCcore-11.3.0 | Zip is a compression and file packaging/archive utility. Although highly compatible both with PKWARE's PKZIP and PKUNZIP utilities for MS-DOS and with Info-ZIP's own UnZip, our primary objectives have been portability and other-than-MSDOS functionality |
| annovar: annovar/20200607-GCCcore-11.2.0-Perl-5.34.0 | ANNOVAR is an efficient software tool to utilize update-to-date information to functionally annotate genetic variants detected from diverse genomes (including human genome hg18, hg19, hg38, as well as mouse, worm, fly, yeast and many others). |
| archspec: archspec/0.1.3-GCCcore-11.2.0, archspec/0.1.4-GCCcore-11.3.0 | A library for detecting, labeling, and reasoning about microarchitectures |
| arpack-ng: arpack-ng/3.8.0-foss-2022b | ARPACK is a collection of Fortran77 subroutines designed to solve large scale eigenvalue problems. |
| at-spi2-atk: at-spi2-atk/2.38.0-GCCcore-12.2.0 | AT-SPI 2 toolkit bridge |
| at-spi2-core: at-spi2-core/2.46.0-GCCcore-12.2.0 | Assistive Technology Service Provider Interface. |
| beagle-lib: beagle-lib/4.0.0-GCC-11.3.0 | beagle-lib is a high-performance library that can perform the core calculations at the heart of most Bayesian and Maximum Likelihood phylogenetics packages. |
| binutils: binutils/2.26, binutils/2.27, binutils/2.31.1-GCCcore-8.2.0, binutils/2.31.1, binutils/2.34-GCCcore-9.3.0, binutils/2.34, binutils/2.35-GCCcore-10.2.0, ... | binutils: GNU binary utilities |
| bzip2: bzip2/1.0.8-GCCcore-9.3.0, bzip2/1.0.8-GCCcore-10.2.0, bzip2/1.0.8-GCCcore-10.3.0, bzip2/1.0.8-GCCcore-11.2.0, bzip2/1.0.8-GCCcore-11.3.0, bzip2/1.0.8-GCCcore-12.2.0, ... | bzip2 is a freely available, patent free, high-quality data compressor. It typically compresses files to within 10% to 15% of the best available techniques (the PPM family of statistical compressors), whilst being around twice as fast at compression and six times faster at decompression. |
| cURL: cURL/7.69.1-GCCcore-9.3.0, cURL/7.72.0-GCCcore-10.2.0, cURL/7.76.0-GCCcore-10.3.0, cURL/7.78.0-GCCcore-11.2.0, cURL/7.83.0-GCCcore-11.3.0, cURL/7.86.0-GCCcore-12.2.0, ... | libcurl is a free and easy-to-use client-side URL transfer library, supporting DICT, FILE, FTP, FTPS, Gopher, HTTP, HTTPS, IMAP, IMAPS, LDAP, LDAPS, POP3, POP3S, RTMP, RTSP, SCP, SFTP, SMTP, SMTPS, Telnet and TFTP. libcurl supports SSL certificates, HTTP POST, HTTP PUT, FTP uploading, HTTP form based upload, proxies, cookies, user+password authentication (Basic, Digest, NTLM, Negotiate, Kerberos), file transfer resume, http proxy tunneling and more. |
| cairo: cairo/1.17.4-GCCcore-11.3.0, cairo/1.17.4-GCCcore-12.2.0 | Cairo is a 2D graphics library with support for multiple output devices. Currently supported output targets include the X Window System (via both Xlib and XCB), Quartz, Win32, image buffers, PostScript, PDF, and SVG file output. Experimental backends include OpenGL, BeOS, OS/2, and DirectFB |
| cffi: cffi/1.16.0-GCCcore-13.3.0 | C Foreign Function Interface for Python. Interact with almost any C code from Python, based on C-like declarations that you can often copy-paste from header files or documentation. |
| cppy: cppy/1.1.0-GCCcore-10.3.0, cppy/1.1.0-GCCcore-11.2.0, cppy/1.2.1-GCCcore-11.3.0, cppy/1.2.1-GCCcore-12.2.0, cppy/1.2.1-GCCcore-13.3.0 | A small C++ header library which makes it easier to write Python extension modules. The primary feature is a PyObject smart pointer which automatically handles reference counting and provides convenience methods for performing common object operations. |
| cryptography: cryptography/42.0.8-GCCcore-13.3.0 | cryptography is a package designed to expose cryptographic primitives and recipes to Python developers. |
| cuDNN: cuDNN/8.4.1.50-CUDA-11.7.0 | The NVIDIA CUDA Deep Neural Network library (cuDNN) is a GPU-accelerated library of primitives for deep neural networks. |
| dill: dill/0.3.6-GCCcore-11.3.0 | dill extends python's pickle module for serializing and de-serializing python objects to the majority of the built-in python types. Serialization is the process of converting an object to a byte stream, and the inverse of which is converting a byte stream back to on python object hierarchy. |
| double-conversion: double-conversion/3.1.5-GCCcore-10.2.0, double-conversion/3.2.0-GCCcore-11.3.0 | Efficient binary-decimal and decimal-binary conversion routines for IEEE doubles. |
| elfutils: elfutils/0.187-GCCcore-11.3.0 | The elfutils project provides libraries and tools for ELF files and DWARF data. |
| expat: expat/2.2.6-GCCcore-8.2.0, expat/2.2.9-GCCcore-9.3.0, expat/2.2.9-GCCcore-10.2.0, expat/2.2.9-GCCcore-10.3.0, expat/2.4.1-GCCcore-11.2.0, expat/2.4.8-GCCcore-11.3.0, ... | Expat is an XML parser library written in C. It is a stream-oriented parser in which an application registers handlers for things the parser might find in the XML document (like start tags) |
| expecttest: expecttest/0.1.3-GCCcore-10.3.0, expecttest/0.1.3-GCCcore-11.3.0 | This library implements expect tests (also known as "golden" tests). Expect tests are a method of writing tests where instead of hard-coding the expected output of a test, you run the test to get the output, and the test framework automatically populates the expected output. If the output of the test changes, you can rerun the test with the environment variable EXPECTTEST_ACCEPT=1 to automatically update the expected output. |
| fastp: fastp/0.23.4-GCC-12.2.0 | A tool designed to provide fast all-in-one preprocessing for FastQ files. This tool is developed in C++ with multithreading supported to afford high performance. |
| ffnvcodec: ffnvcodec/11.1.5.2 | FFmpeg nvidia headers. Adds support for nvenc and nvdec. Requires Nvidia GPU and drivers to be present (picked up dynamically). |
| file: file/5.40-GCCcore-10.3.0 | The file command is 'a file type guesser', that is, a command-line tool that tells you in words what kind of data a file contains. |
| flatbuffers: flatbuffers/2.0.7-GCCcore-11.3.0 | FlatBuffers: Memory Efficient Serialization Library Includes the Flatbuffers compiler, C/C++ bindings and Python runtime library. |
| flatbuffers-python: flatbuffers-python/2.0-GCCcore-11.3.0 | Python Flatbuffers runtime library. |
| flex: flex/2.6.0, flex/2.6.4-GCCcore-8.2.0, flex/2.6.4-GCCcore-9.3.0, flex/2.6.4-GCCcore-10.2.0, flex/2.6.4-GCCcore-10.3.0, flex/2.6.4-GCCcore-11.2.0, ... | Flex (Fast Lexical Analyzer) is a tool for generating scanners. A scanner, sometimes called a tokenizer, is a program which recognizes lexical patterns in text. |
| flit: flit/3.9.0-GCCcore-13.3.0 | A simple packaging tool for simple packages. |
| fontconfig: fontconfig/2.13.92-GCCcore-10.2.0, fontconfig/2.13.93-GCCcore-10.3.0, fontconfig/2.13.94-GCCcore-11.2.0, fontconfig/2.14.0-GCCcore-11.3.0, ... | Fontconfig is a library designed to provide system-wide font configuration, customization and application access. |
| foss: foss/2020a, foss/2020b, foss/2021a, foss/2021b, foss/2022a, foss/2022b, foss/2023a | GNU Compiler Collection (GCC) based compiler toolchain, including OpenMPI for MPI support, OpenBLAS (BLAS and LAPACK support), FFTW and ScaLAPACK. |
| freetype: freetype/2.10.3-GCCcore-10.2.0, freetype/2.10.4-GCCcore-10.3.0, freetype/2.11.0-GCCcore-11.2.0, freetype/2.12.1-GCCcore-11.3.0, freetype/2.12.1-GCCcore-12.2.0, ... | FreeType 2 is a software font engine that is designed to be small, efficient, highly customizable, and portable while capable of producing high-quality output (glyph images). It can be used in graphics libraries, display servers, font conversion tools, text image generation tools, and many other products as well. |
| gettext: gettext/0.19.8.1, gettext/0.20.1-GCCcore-9.3.0, gettext/0.20.1, gettext/0.21-GCCcore-10.2.0, gettext/0.21-GCCcore-10.3.0, gettext/0.21-GCCcore-11.2.0, ... | GNU 'gettext' is an important step for the GNU Translation Project, as it is an asset on which we may build many other steps. This package offers to programmers, translators, and even users, a well integrated set of tools and documentation |
| gfbf: gfbf/2022b, gfbf/2024a | GNU Compiler Collection (GCC) based compiler toolchain, including FlexiBLAS (BLAS and LAPACK support) and (serial) FFTW. |
| giflib: giflib/5.2.1-GCCcore-11.3.0, giflib/5.2.1-GCCcore-12.2.0, giflib/5.2.1-GCCcore-13.3.0 | giflib is a library for reading and writing gif images. It is API and ABI compatible with libungif which was in wide use while the LZW compression algorithm was patented. |
| git: git/2.23.0-GCCcore-9.3.0-nodocs, git/2.28.0-GCCcore-10.2.0-nodocs, git/2.32.0-GCCcore-10.3.0-nodocs, git/2.33.1-GCCcore-11.2.0-nodocs, git/2.36.0-GCCcore-11.3.0-nodocs, ... | Git is a free and open source distributed version control system designed to handle everything from small to very large projects with speed and efficiency. |
| glew: glew/2.1.0-GCCcore-10.2.0 | The OpenGL Extension Wrangler Library (GLEW) is a cross-platform open-source C/C++ extension loading library. GLEW provides efficient run-time mechanisms for determining which OpenGL extensions are supported on the target platform. |
| gmpy2: gmpy2/2.1.2-GCC-11.3.0 | GMP/MPIR, MPFR, and MPC interface to Python 2.6+ and 3.x |
| gofasta: gofasta/0.0.5 | Some functions for dealing with alignments, developed to handle SARS-CoV-2 data as part of the COG-UK project. |
| gompi: gompi/2019a, gompi/2020a, gompi/2020b, gompi/2021a, gompi/2021b, gompi/2022a, gompi/2022b, gompi/2023a | GNU Compiler Collection (GCC) based compiler toolchain, including OpenMPI for MPI support. |
| googletest: googletest/1.11.0-GCCcore-11.3.0, googletest/1.12.1-GCCcore-12.2.0 | Google's framework for writing C++ tests on a variety of platforms |
| gperf: gperf/3.1-GCCcore-10.2.0, gperf/3.1-GCCcore-10.3.0, gperf/3.1-GCCcore-11.2.0, gperf/3.1-GCCcore-11.3.0, gperf/3.1-GCCcore-12.2.0, gperf/3.1-GCCcore-13.3.0 | GNU gperf is a perfect hash function generator. For a given list of strings, it produces a hash function and hash table, in form of C or C++ code, for looking up a value depending on the input string. The hash function is perfect, which means that the hash table has no collisions, and the hash table lookup needs a single string comparison only. |
| groff: groff/1.22.4-GCCcore-9.3.0, groff/1.22.4-GCCcore-10.2.0, groff/1.22.4-GCCcore-10.3.0, groff/1.22.4-GCCcore-11.2.0, groff/1.22.4-GCCcore-11.3.0, ... | Groff (GNU troff) is a typesetting system that reads plain text mixed with formatting commands and produces formatted output. |
| gzip: gzip/1.10-GCCcore-10.2.0, gzip/1.10-GCCcore-10.3.0, gzip/1.10-GCCcore-11.2.0, gzip/1.12-GCCcore-11.3.0, gzip/1.12-GCCcore-12.2.0, gzip/1.13-GCCcore-13.3.0 | gzip (GNU zip) is a popular data compression program as a replacement for compress |
| h5py: h5py/3.7.0-foss-2022a | HDF5 for Python (h5py) is a general-purpose Python interface to the Hierarchical Data Format library, version 5. HDF5 is a versatile, mature scientific software library designed for the fast, flexible storage of enormous amounts of data. |
| hatchling: hatchling/1.24.2-GCCcore-13.3.0 | Extensible, standards compliant build backend used by Hatch, a modern, extensible Python project manager. |
| help2man: help2man/1.47.7-GCCcore-8.2.0, help2man/1.47.12-GCCcore-9.3.0, help2man/1.47.16-GCCcore-10.2.0, help2man/1.48.3-GCCcore-10.3.0, help2man/1.48.3-GCCcore-11.2.0, ... | help2man produces simple manual pages from the '--help' and '--version' output of other commands. |
| humann: humann/3.6-foss-2022a | HUMAnN v3 is a pipeline for efficiently and accurately determining the coverage and abundance of microbial pathways in a community from metagenomic data. Sequencing a metagenome typically produces millions of short DNA/RNA reads. This process, referred to as functional profiling, aims to describe the metabolic potential of a microbial community and its members. More generally, functional profiling answers the question: What are the microbes in my community-of-interest doing (or capable of doing)? |
| hwloc: hwloc/1.11.11-GCCcore-8.2.0, hwloc/2.2.0-GCCcore-9.3.0, hwloc/2.2.0-GCCcore-10.2.0, hwloc/2.4.1-GCCcore-10.3.0, hwloc/2.5.0-GCCcore-11.2.0, hwloc/2.7.1-GCCcore-11.3.0, ... | The Portable Hardware Locality (hwloc) software package provides a portable abstraction (across OS, versions, architectures, ...) of the hierarchical topology of modern architectures, including NUMA memory nodes, sockets, shared caches, cores and simultaneous multithreading. It also gathers various system attributes such as cache and memory information as well as the locality of I/O devices such as network interfaces, InfiniBand HCAs or GPUs. It primarily aims at helping applications with gathering information about modern computing hardware so as to exploit it accordingly and efficiently. |
| hypothesis: hypothesis/5.41.2-GCCcore-10.2.0, hypothesis/6.13.1-GCCcore-10.3.0, hypothesis/6.14.6-GCCcore-11.2.0, hypothesis/6.46.7-GCCcore-11.3.0, ... | Hypothesis is an advanced testing library for Python. It lets you write tests which are parametrized by a source of examples, and then generates simple and comprehensible examples that make your tests fail. This lets you find more bugs in your code with less work. |
| intel-compilers: intel-compilers/2021.4.0 | Intel C, C++ & Fortran compilers (classic and oneAPI) |
| intltool: intltool/0.51.0-GCCcore-10.2.0, intltool/0.51.0-GCCcore-10.3.0, intltool/0.51.0-GCCcore-11.2.0, intltool/0.51.0-GCCcore-11.3.0, intltool/0.51.0-GCCcore-12.2.0, ... | intltool is a set of tools to centralize translation of many different file formats using GNU gettext-compatible PO files. |
| jax: jax/0.3.25-foss-2022a | Composable transformations of Python+NumPy programs: differentiate, vectorize, JIT to GPU/TPU, and more |
| jbigkit: jbigkit/2.1-GCCcore-10.3.0, jbigkit/2.1-GCCcore-11.2.0, jbigkit/2.1-GCCcore-11.3.0, jbigkit/2.1-GCCcore-12.2.0, jbigkit/2.1-GCCcore-13.3.0 | JBIG-KIT is a software implementation of the JBIG1 data compression standard (ITU-T T.82), which was designed for bi-level image data, such as scanned documents. |
| jemalloc: jemalloc/5.2.1-GCCcore-11.2.0 | jemalloc is a general purpose malloc(3) implementation that emphasizes fragmentation avoidance and scalable concurrency support. |
| json-c: json-c/0.16-GCCcore-12.2.0 | JSON-C implements a reference counting object model that allows you to easily construct JSON objects in C, output them as JSON formatted strings and parse JSON formatted strings back into the C representation of JSON objects. |
| kim-api: kim-api/2.3.0-GCCcore-11.2.0, kim-api/2.3.0-GCCcore-11.3.0 | Open Knowledgebase of Interatomic Models. KIM is an API and OpenKIM is a collection of interatomic models (potentials) for atomistic simulations. This is a library that can be used by simulation programs to get access to the models in the OpenKIM database. This EasyBuild only installs the API, the models can be installed with the package openkim-models, or the user can install them manually by running kim-api-collections-management install user MODELNAME or kim-api-collections-management install user OpenKIM to install them all. |
| kineto: kineto/0.4.0-GCC-11.3.0 | A CPU+GPU Profiling library that provides access to timeline traces and hardware performance counters |
| libGLU: libGLU/9.0.1-GCCcore-10.2.0, libGLU/9.0.2-GCCcore-11.2.0, libGLU/9.0.2-GCCcore-11.3.0, libGLU/9.0.2-GCCcore-12.2.0 | The OpenGL Utility Library (GLU) is a computer graphics library for OpenGL. |
| libaec: libaec/1.0.6-GCCcore-11.3.0 | Libaec provides fast lossless compression of 1 up to 32 bit wide signed or unsigned integers (samples). The library achieves best results for low entropy data as often encountered in space imaging instrument data or numerical model output from weather or climate simulations. While floating point representations are not directly supported, they can also be efficiently coded by grouping exponents and mantissa. |
| libaio: libaio/0.3.112-GCCcore-11.2.0 | Asynchronous input/output library that uses the kernels native interface. |
| libarchive: libarchive/3.4.3-GCCcore-10.2.0, libarchive/3.5.1-GCCcore-10.3.0, libarchive/3.5.1-GCCcore-11.2.0, libarchive/3.6.1-GCCcore-11.3.0, ... | Multi-format archive and compression library |
| libdeflate: libdeflate/1.10-GCCcore-11.3.0, libdeflate/1.15-GCCcore-12.2.0, libdeflate/1.20-GCCcore-13.3.0 | Heavily optimized library for DEFLATE/zlib/gzip compression and decompression. |
| libdrm: libdrm/2.4.102-GCCcore-10.2.0, libdrm/2.4.107-GCCcore-11.2.0, libdrm/2.4.110-GCCcore-11.3.0, libdrm/2.4.114-GCCcore-12.2.0 | Direct Rendering Manager runtime library. |
| libepoxy: libepoxy/1.5.10-GCCcore-12.2.0 | Epoxy is a library for handling OpenGL function pointer management for you |
| libevent: libevent/2.1.11-GCCcore-9.3.0, libevent/2.1.12-GCCcore-10.2.0, libevent/2.1.12-GCCcore-10.3.0, libevent/2.1.12-GCCcore-11.2.0, libevent/2.1.12-GCCcore-11.3.0, ... | The libevent API provides a mechanism to execute a callback function when a specific event occurs on a file descriptor or after a timeout has been reached. Furthermore, libevent also support callbacks due to signals or regular timeouts. |
| libfabric: libfabric/1.11.0-GCCcore-9.3.0, libfabric/1.11.0-GCCcore-10.2.0, libfabric/1.12.1-GCCcore-10.3.0, libfabric/1.13.2-GCCcore-11.2.0, libfabric/1.15.1-GCCcore-11.3.0, ... | Libfabric is a core component of OFI. It is the library that defines and exports the user-space API of OFI, and is typically the only software that applications deal with directly. It works in conjunction with provider libraries, which are often integrated directly into libfabric. |
| libffi: libffi/3.3-GCCcore-9.3.0, libffi/3.3-GCCcore-10.2.0, libffi/3.3-GCCcore-10.3.0, libffi/3.4.2-GCCcore-11.2.0, libffi/3.4.2-GCCcore-11.3.0, libffi/3.4.4-GCCcore-12.2.0, ... | The libffi library provides a portable, high level programming interface to various calling conventions. This allows a programmer to call any function specified by a call interface description at run-time. |
| libgd: libgd/2.3.3-GCCcore-11.3.0 | GD is an open source code library for the dynamic creation of images by programmers. |
| libgeotiff: libgeotiff/1.7.1-GCCcore-11.3.0, libgeotiff/1.7.1-GCCcore-12.2.0 | Library for reading and writing coordinate system information from/to GeoTIFF files |
| libgit2: libgit2/1.4.3-GCCcore-11.3.0, libgit2/1.5.0-GCCcore-12.2.0 | libgit2 is a portable, pure C implementation of the Git core methods provided as a re-entrant linkable library with a solid API, allowing you to write native speed custom Git applications in any language which supports C bindings. |
| libglvnd: libglvnd/1.3.2-GCCcore-10.2.0, libglvnd/1.3.3-GCCcore-11.2.0, libglvnd/1.4.0-GCCcore-11.3.0, libglvnd/1.6.0-GCCcore-12.2.0 | libglvnd is a vendor-neutral dispatch layer for arbitrating OpenGL API calls between multiple vendors. |
| libharu: libharu/2.3.0-foss-2021b | libHaru is a free, cross platform, open source library for generating PDF files. |
| libiconv: libiconv/1.16-GCCcore-10.2.0, libiconv/1.16-GCCcore-10.3.0, libiconv/1.16-GCCcore-11.2.0, libiconv/1.17-GCCcore-11.3.0, libiconv/1.17-GCCcore-12.2.0, ... | Libiconv converts from one character encoding to another through Unicode conversion |
| libidn2: libidn2/2.3.2-GCCcore-11.3.0 | Libidn2 implements the revised algorithm for internationalized domain names called IDNA2008/TR46. |
| libjpeg-turbo: libjpeg-turbo/2.0.5-GCCcore-10.2.0, libjpeg-turbo/2.0.6-GCCcore-10.3.0, libjpeg-turbo/2.0.6-GCCcore-11.2.0, libjpeg-turbo/2.1.3-GCCcore-11.3.0, ... | libjpeg-turbo is a fork of the original IJG libjpeg which uses SIMD to accelerate baseline JPEG compression and decompression. libjpeg is a library that implements JPEG image encoding, decoding and transcoding. |
| libogg: libogg/1.3.5-GCCcore-11.3.0, libogg/1.3.5-GCCcore-12.2.0 | Ogg is a multimedia container format, and the native file and stream format for the Xiph.org multimedia codecs. |
| libopus: libopus/1.3.1-GCCcore-11.3.0, libopus/1.3.1-GCCcore-12.2.0 | Opus is a totally open, royalty-free, highly versatile audio codec. Opus is unmatched for interactive speech and music transmission over the Internet, but is also intended for storage and streaming applications. It is standardized by the Internet Engineering Task Force (IETF) as RFC 6716 which incorporated technology from Skype’s SILK codec and Xiph.Org’s CELT codec. |
| libpciaccess: libpciaccess/0.14-GCCcore-8.2.0, libpciaccess/0.16-GCCcore-9.3.0, libpciaccess/0.16-GCCcore-10.2.0, libpciaccess/0.16-GCCcore-10.3.0, ... | Generic PCI access library. |
| libpng: libpng/1.6.37-GCCcore-10.2.0, libpng/1.6.37-GCCcore-10.3.0, libpng/1.6.37-GCCcore-11.2.0, libpng/1.6.37-GCCcore-11.3.0, libpng/1.6.38-GCCcore-12.2.0, ... | libpng is the official PNG reference library |
| libreadline: libreadline/8.0-GCCcore-9.3.0, libreadline/8.0-GCCcore-10.2.0, libreadline/8.1-GCCcore-10.3.0, libreadline/8.1-GCCcore-11.2.0, libreadline/8.1.2-GCCcore-11.3.0, ... | The GNU Readline library provides a set of functions for use by applications that allow users to edit command lines as they are typed in. Both Emacs and vi editing modes are available. The Readline library includes additional functions to maintain a list of previously-entered command lines, to recall and perhaps reedit those lines, and perform csh-like history expansion on previous commands. |
| libsndfile: libsndfile/1.1.0-GCCcore-11.3.0, libsndfile/1.2.0-GCCcore-12.2.0 | Libsndfile is a C library for reading and writing files containing sampled sound (such as MS Windows WAV and the Apple/SGI AIFF format) through one standard library interface. |
| libsodium: libsodium/1.0.18-GCCcore-11.2.0, libsodium/1.0.18-GCCcore-11.3.0 | Sodium is a modern, easy-to-use software library for encryption, decryption, signatures, password hashing and more. |
| libtirpc: libtirpc/1.3.2-GCCcore-11.3.0, libtirpc/1.3.3-GCCcore-12.2.0 | Libtirpc is a port of Suns Transport-Independent RPC library to Linux. |
| libtool: libtool/2.4.6-GCCcore-8.2.0, libtool/2.4.6-GCCcore-9.3.0, libtool/2.4.6-GCCcore-10.2.0, libtool/2.4.6-GCCcore-10.3.0, libtool/2.4.6-GCCcore-11.2.0, ... | GNU libtool is a generic library support script. Libtool hides the complexity of using shared libraries behind a consistent, portable interface. |
| libunwind: libunwind/1.4.0-GCCcore-10.2.0, libunwind/1.5.0-GCCcore-11.2.0, libunwind/1.6.2-GCCcore-11.3.0, libunwind/1.6.2-GCCcore-12.2.0 | The primary goal of libunwind is to define a portable and efficient C programming interface (API) to determine the call-chain of a program. The API additionally provides the means to manipulate the preserved (callee-saved) state of each call-frame and to resume execution at any point in the call-chain (non-local goto). The API supports both local (same-process) and remote (across-process) operation. As such, the API is useful in a number of applications |
| libvorbis: libvorbis/1.3.7-GCCcore-11.3.0, libvorbis/1.3.7-GCCcore-12.2.0 | Ogg Vorbis is a fully open, non-proprietary, patent-and-royalty-free, general-purpose compressed audio format |
| libwebp: libwebp/1.4.0-GCCcore-13.3.0 | WebP is a modern image format that provides superior lossless and lossy compression for images on the web. Using WebP, webmasters and web developers can create smaller, richer images that make the web faster. |
| libxml2: libxml2/2.9.8-GCCcore-8.2.0, libxml2/2.9.10-GCCcore-9.3.0, libxml2/2.9.10-GCCcore-10.2.0, libxml2/2.9.10-GCCcore-10.3.0, libxml2/2.9.10-GCCcore-11.2.0, ... | Libxml2 is the XML C parser and toolchain developed for the Gnome project (but usable outside of the Gnome platform). |
| libxslt: libxslt/1.1.34-GCCcore-11.3.0, libxslt/1.1.37-GCCcore-12.2.0 | Libxslt is the XSLT C library developed for the GNOME project (but usable outside of the Gnome platform). |
| libyaml: libyaml/0.2.5-GCCcore-10.3.0, libyaml/0.2.5-GCCcore-11.2.0, libyaml/0.2.5-GCCcore-11.3.0 | LibYAML is a YAML parser and emitter written in C. |
| lmod: lmod | Lmod: An Environment Module System |
| lxml: lxml/4.9.1-GCCcore-11.3.0 | The lxml XML toolkit is a Pythonic binding for the C libraries libxml2 and libxslt. |
| lz4: lz4/1.9.2-GCCcore-10.2.0, lz4/1.9.3-GCCcore-10.3.0, lz4/1.9.3-GCCcore-11.2.0, lz4/1.9.3-GCCcore-11.3.0, lz4/1.9.4-GCCcore-12.2.0, lz4/1.9.4-GCCcore-13.3.0 | LZ4 is lossless compression algorithm, providing compression speed at 400 MB/s per core. It features an extremely fast decoder, with speed in multiple GB/s per core. |
| magma: magma/2.6.2-foss-2022a-CUDA-11.7.0 | The MAGMA project aims to develop a dense linear algebra library similar to LAPACK but for heterogeneous/hybrid architectures, starting with current Multicore+GPU systems. |
| make: make/4.3-GCCcore-9.3.0, make/4.3-GCCcore-10.2.0, make/4.3-GCCcore-10.3.0, make/4.3-GCCcore-11.2.0, make/4.3-GCCcore-11.3.0, make/4.3-GCCcore-12.2.0, ... | GNU version of make utility |
| makeinfo: makeinfo/6.7-GCCcore-9.3.0-minimal, makeinfo/6.7-GCCcore-10.2.0-minimal, makeinfo/6.7-GCCcore-10.3.0-minimal | makeinfo is part of the Texinfo project, the official documentation format of the GNU project. This is a minimal build with very basic functionality. Should only be used for build dependencies. |
| matplotlib: matplotlib/3.4.3-foss-2021b, matplotlib/3.5.2-foss-2022a, matplotlib/3.7.0-gfbf-2022b | matplotlib is a python 2D plotting library which produces publication quality figures in a variety of hardcopy formats and interactive environments across platforms. matplotlib can be used in python scripts, the python and ipython shell, web application servers, and six graphical user interface toolkits. |
| maturin: maturin/1.6.0-GCCcore-13.3.0 | This project is meant as a zero configuration replacement for setuptools-rust and milksnake. It supports building wheels for python 3.5+ on windows, linux, mac and freebsd, can upload them to pypi and has basic pypy and graalpy support. |
| meson-python: meson-python/0.16.0-GCCcore-13.3.0 | Python build backend (PEP 517) for Meson projects |
| minimap2: minimap2/2.22-GCCcore-11.2.0 | Minimap2 is a fast sequence mapping and alignment program that can find overlaps between long noisy reads, or map long reads or their assemblies to a reference genome optionally with detailed alignment (i.e. CIGAR). At present, it works efficiently with query sequences from a few kilobases to ~100 megabases in length at an error rate ~15%. Minimap2 outputs in the PAF or the SAM format. On limited test data sets, minimap2 is over 20 times faster than most other long-read aligners. It will replace BWA-MEM for long reads and contig alignment. |
| ncbi-vdb: ncbi-vdb/3.0.5-gompi-2021a | The SRA Toolkit and SDK from NCBI is a collection of tools and libraries for using data in the INSDC Sequence Read Archives. |
| ncurses: ncurses/6.0, ncurses/6.1, ncurses/6.2-GCCcore-9.3.0, ncurses/6.2-GCCcore-10.2.0, ncurses/6.2-GCCcore-10.3.0, ncurses/6.2-GCCcore-11.2.0, ncurses/6.2, ... | The Ncurses (new curses) library is a free software emulation of curses in System V Release 4.0, and more. It uses Terminfo format, supports pads and color and multiple highlights and forms characters and function-key mapping, and has all the other SYSV-curses enhancements over BSD Curses. |
| netCDF: netCDF/4.7.4-gompi-2020b, netCDF/4.8.1-gompi-2021b, netCDF/4.9.0-gompi-2022a, netCDF/4.9.0-gompi-2022b | NetCDF (network Common Data Form) is a set of software libraries and machine-independent data formats that support the creation, access, and sharing of array-oriented scientific data. |
| netCDF-Fortran: netCDF-Fortran/4.5.3-gompi-2021b | NetCDF (network Common Data Form) is a set of software libraries and machine-independent data formats that support the creation, access, and sharing of array-oriented scientific data. |
| nettle: nettle/3.8-GCCcore-11.3.0, nettle/3.8.1-GCCcore-12.2.0 | Nettle is a cryptographic library that is designed to fit easily in more or less any context: In crypto toolkits for object-oriented languages (C++, Python, Pike, ...), in applications like LSH or GNUPG, or even in kernel space. |
| networkx: networkx/2.8.4-foss-2022a | NetworkX is a Python package for the creation, manipulation, and study of the structure, dynamics, and functions of complex networks. |
| nlohmann_json: nlohmann_json/3.10.5-GCCcore-11.3.0, nlohmann_json/3.11.2-GCCcore-12.2.0 | JSON for Modern C++ |
| nodejs: nodejs/16.15.1-GCCcore-11.3.0, nodejs/18.12.1-GCCcore-12.2.0 | Node.js is a platform built on Chrome's JavaScript runtime for easily building fast, scalable network applications. Node.js uses an event-driven, non-blocking I/O model that makes it lightweight and efficient, perfect for data-intensive real-time applications that run across distributed devices. |
| nsync: nsync/1.25.0-GCCcore-11.3.0 | nsync is a C library that exports various synchronization primitives, such as mutexes |
| numactl: numactl/2.0.12-GCCcore-8.2.0, numactl/2.0.13-GCCcore-9.3.0, numactl/2.0.13-GCCcore-10.2.0, numactl/2.0.14-GCCcore-10.3.0, numactl/2.0.14-GCCcore-11.2.0, ... | The numactl program allows you to run your application program on specific cpu's and memory nodes. It does this by supplying a NUMA memory policy to the operating system before running your program. The libnuma library provides convenient ways for you to add NUMA memory policies into your own program. |
| numexpr: numexpr/2.7.1-foss-2020a-Python-3.8.2 | The numexpr package evaluates multiple-operator array expressions many times faster than NumPy can. It accepts the expression as a string, analyzes it, rewrites it more efficiently, and compiles it on the fly into code for its internal virtual machine (VM). Due to its integrated just-in-time (JIT) compiler, it does not require a compiler at runtime. |
| pandas: pandas/1.1.2-foss-2020a-Python-3.8.2 | pandas is an open source, BSD-licensed library providing high-performance, easy-to-use data structures and data analysis tools for the Python programming language. |
| pangolin: pangolin/3.1.16-foss-2021b-pangoLEARN-2021-11-25 | Software package for assigning SARS-CoV-2 genome sequences to global lineages. This module also contains the faToVcf tool |
| parallel: parallel/20220722-GCCcore-11.3.0 | parallel: Build and execute shell commands in parallel |
| patchelf: patchelf/0.18.0-GCCcore-13.3.0 | PatchELF is a small utility to modify the dynamic linker and RPATH of ELF executables. |
| picard: picard/3.0.0-Java-17 | A set of tools (in Java) for working with next generation sequencing data in the BAM format. |
| pixman: pixman/0.40.0-GCCcore-11.3.0, pixman/0.42.2-GCCcore-12.2.0 | Pixman is a low-level software library for pixel manipulation, providing features such as image compositing and trapezoid rasterization. Important users of pixman are the cairo graphics library and the X server. |
| pkg-config: pkg-config/0.29.2-GCCcore-9.3.0, pkg-config/0.29.2-GCCcore-10.2.0, pkg-config/0.29.2-GCCcore-10.3.0, pkg-config/0.29.2-GCCcore-11.2.0, ... | pkg-config is a helper tool used when compiling applications and libraries. It helps you insert the correct compiler options on the command line so an application can use gcc -o test test.c `pkg-config --libs --cflags glib-2.0` for instance, rather than hard-coding values on where to find glib (or other libraries). |
| pkgconf: pkgconf/1.8.0-GCCcore-11.3.0, pkgconf/1.8.0, pkgconf/1.9.3-GCCcore-12.2.0, pkgconf/1.9.5-GCCcore-12.3.0, pkgconf/2.2.0-GCCcore-13.3.0 | pkgconf is a program which helps to configure compiler and linker flags for development libraries. It is similar to pkg-config from freedesktop.org. |
| pkgconfig: pkgconfig/1.5.5-GCCcore-11.3.0-python | pkgconfig is a Python module to interface with the pkg-config command line tool |
| pocl: pocl/1.8-GCC-11.3.0 | Pocl is a portable open source (MIT-licensed) implementation of the OpenCL standard |
| poetry: poetry/1.8.3-GCCcore-13.3.0 | Python packaging and dependency management made easy. Poetry helps you declare, manage and install dependencies of Python projects, ensuring you have the right stack everywhere. |
| pplacer: pplacer/1.1.alpha19 | Pplacer places query sequences on a fixed reference phylogenetic tree to maximize phylogenetic likelihood or posterior probability according to a reference alignment. Pplacer is designed to be fast, to give useful information about uncertainty, and to offer advanced visualization and downstream analysis. |
| prodigal: prodigal/2.6.3-GCCcore-10.3.0, prodigal/2.6.3-GCCcore-11.2.0, prodigal/2.6.3-GCCcore-11.3.0 | Prodigal (Prokaryotic Dynamic Programming Genefinding Algorithm) is a microbial (bacterial and archaeal) gene finding program developed at Oak Ridge National Laboratory and the University of Tennessee. |
| prokka: prokka/1.14.5-gompi-2022a | Prokka is a software tool for the rapid annotation of prokaryotic genomes. |
| protobuf: protobuf/3.17.3-GCCcore-10.3.0, protobuf/3.17.3-GCCcore-11.2.0, protobuf/3.19.4-GCCcore-11.3.0 | Google Protocol Buffers |
| protobuf-python: protobuf-python/3.17.3-GCCcore-10.3.0, protobuf-python/3.19.4-GCCcore-11.3.0 | Python Protocol Buffers runtime library. |
| py3Dmol: py3Dmol/2.0.1.post1-GCCcore-11.3.0 | A simple IPython/Jupyter widget to embed an interactive 3Dmol.js viewer in a notebook. |
| pybind11: pybind11/2.4.3-GCCcore-9.3.0-Python-3.8.2, pybind11/2.6.0-GCCcore-10.2.0, pybind11/2.6.2-GCCcore-10.3.0, pybind11/2.7.1-GCCcore-11.2.0, ... | pybind11 is a lightweight header-only library that exposes C++ types in Python and vice versa, mainly to create Python bindings of existing C++ code. |
| pytest-flakefinder: pytest-flakefinder/1.1.0-GCCcore-11.3.0 | Runs tests multiple times to expose flakiness. |
| pytest-rerunfailures: pytest-rerunfailures/11.1-GCCcore-11.3.0 | pytest plugin to re-run tests to eliminate flaky failures. |
| pytest-shard: pytest-shard/0.1.2-GCCcore-11.3.0 | pytest plugin to support parallelism across multiple machines. Shards tests based on a hash of their test name enabling easy parallelism across machines, suitable for a wide variety of continuous integration services. Tests are split at the finest level of granularity, individual test cases, enabling parallelism even if all of your tests are in a single file (or even single parameterized test method). |
| pytest-xdist: pytest-xdist/2.5.0-GCCcore-11.3.0 | xdist: pytest distributed testing plugin The pytest-xdist plugin extends pytest with some unique test execution modes: * test run parallelization: if you have multiple CPUs or hosts you can use those for a combined test run. This allows to speed up development or to use special resources of remote machines. * --looponfail: run your tests repeatedly in a subprocess. After each run pytest waits until a file in your project changes and then re-runs the previously failing tests. This is repeated until all tests pass after which again a full run is performed. * Multi-Platform coverage: you can specify different Python interpreters or different platforms and run tests in parallel on all of them. Before running tests remotely, pytest efficiently “rsyncs” your program source code to the remote place. All test results are reported back and displayed to your local terminal. You may specify different Python versions and interpreters. |
| re2c: re2c/2.0.3-GCCcore-10.2.0 | re2c is a free and open-source lexer generator for C and C++. Its main goal is generating fast lexers: at least as fast as their reasonably optimized hand-coded counterparts. Instead of using traditional table-driven approach, re2c encodes the generated finite state automata directly in the form of conditional jumps and comparisons. |
| scikit-build: scikit-build/0.17.6-GCCcore-13.3.0 | Scikit-Build, or skbuild, is an improved build system generator for CPython C/C++/Fortran/Cython extensions. |
| scikit-learn: scikit-learn/1.0.1-foss-2021b | Scikit-learn integrates machine learning algorithms in the tightly-knit scientific Python world, building upon numpy, scipy, and matplotlib. As a machine-learning module, it provides versatile tools for data mining and analysis in any field of science and engineering. It strives to be simple and efficient, accessible to everybody, and reusable in various contexts. |
| settarg: settarg | The settarg module provides a way to connect the loaded modules with your build system by setting environment variables. |
| setuptools-rust: setuptools-rust/1.9.0-GCCcore-13.3.0 | setuptools-rust is a plugin for setuptools to build Rust Python extensions implemented with PyO3 or rust-cpython. |
| sklearn-pandas: sklearn-pandas/2.2.0-foss-2021b | This module provides a bridge between Scikit-Learn's machine learning methods and pandas-style Data Frames. In particular, it provides a way to map DataFrame columns to transformations, which are later recombined into features. |
| snakemake: snakemake/6.10.0-foss-2021b, snakemake/7.22.0-foss-2022a | The Snakemake workflow management system is a tool to create reproducible and scalable data analyses. |
| snappy: snappy/1.1.8-GCCcore-10.2.0, snappy/1.1.9-GCCcore-11.2.0, snappy/1.1.9-GCCcore-11.3.0 | Snappy is a compression/decompression library. It does not aim for maximum compression, or compatibility with any other compression library; instead, it aims for very high speeds and reasonable compression. |
| snpEff: snpEff/5.0e-GCCcore-11.2.0-Java-11 | SnpEff is a variant annotation and effect prediction tool. It annotates and predicts the effects of genetic variants (such as amino acid changes). |
| sparsehash: sparsehash/2.0.4-GCCcore-10.2.0 | An extremely memory-efficient hash_map implementation. 2 bits/entry overhead! The SparseHash library contains several hash-map implementations, including implementations that optimize for space or speed. |
| sradownloader: sradownloader/3.9-GCCcore-11.3.0 | SRAdownloader takes the annotation table from the SRA run selector tool and retrieves the raw fastq files for the selected samples |
| sympy: sympy/1.10.1-foss-2022a | SymPy is a Python library for symbolic mathematics. It aims to become a full-featured computer algebra system (CAS) while keeping the code as simple as possible in order to be comprehensible and easily extensible. SymPy is written entirely in Python and does not require any external libraries. |
| tbb: tbb/2020.3-GCCcore-11.2.0, tbb/2021.5.0-GCCcore-11.3.0 | Intel(R) Threading Building Blocks (Intel(R) TBB) lets you easily write parallel C++ programs that take full advantage of multicore performance, that are portable, composable and have future-proof scalability. |
| tbl2asn: tbl2asn/20220427-linux64 | Tbl2asn is a command-line program that automates the creation of sequence records for submission to GenBank |
| tcsh: tcsh/6.22.04-GCCcore-10.3.0 | Tcsh is an enhanced, but completely compatible version of the Berkeley UNIX C shell (csh). It is a command language interpreter usable both as an interactive login shell and a shell script command processor. It includes a command-line editor, programmable word completion, spelling correction, a history mechanism, job control and a C-like syntax. |
| tqdm: tqdm/4.61.2-GCCcore-10.3.0, tqdm/4.62.3-GCCcore-11.2.0, tqdm/4.64.0-GCCcore-11.3.0 | A fast, extensible progress bar for Python and CLI |
| typing-extensions: typing-extensions/3.10.0.0-GCCcore-10.3.0, typing-extensions/4.3.0-GCCcore-11.3.0 | Typing Extensions – Backported and Experimental Type Hints for Python |
| util-linux: util-linux/2.36-GCCcore-10.2.0, util-linux/2.36-GCCcore-10.3.0, util-linux/2.37-GCCcore-11.2.0, util-linux/2.38-GCCcore-11.3.0, util-linux/2.38.1-GCCcore-12.2.0 | Set of Linux utilities |
| virtualenv: virtualenv/20.26.2-GCCcore-13.3.0 | A tool for creating isolated virtual python environments. |
| wget: wget/1.21.3-GCCcore-11.3.0 | GNU Wget is a free software package for retrieving files using HTTP, HTTPS and FTP, the most widely-used Internet protocols. It is a non-interactive commandline tool, so it may easily be called from scripts, cron jobs, terminals without X-Windows support, etc. |
| x264: x264/20210414-GCCcore-10.3.0, x264/20210613-GCCcore-11.2.0, x264/20220620-GCCcore-11.3.0 | x264 is a free software library and application for encoding video streams into the H.264/MPEG-4 AVC compression format, and is released under the terms of the GNU GPL. |
| x265: x265/3.5-GCCcore-10.3.0, x265/3.5-GCCcore-11.2.0, x265/3.5-GCCcore-11.3.0 | x265 is a free software library and application for encoding video streams into the H.265 AVC compression format, and is released under the terms of the GNU GPL. |
| xorg-macros: xorg-macros/1.19.2-GCCcore-8.2.0, xorg-macros/1.19.2-GCCcore-9.3.0, xorg-macros/1.19.2-GCCcore-10.2.0, xorg-macros/1.19.3-GCCcore-10.3.0, ... | X.org macros utilities. |
| xprop: xprop/1.2.5-GCCcore-11.3.0 | The xprop utility is for displaying window and font properties in an X server. One window or font is selected using the command line arguments or possibly in the case of a window, by clicking on the desired window. A list of properties is then given, possibly with formatting information. |
| xxd: xxd/8.2.4220-GCCcore-11.2.0, xxd/8.2.4220-GCCcore-11.3.0 | xxd is part of the VIM package and this will only install xxd, not vim! xxd converts to/from hexdumps of binary files. |
| zlib: zlib/1.2.8, zlib/1.2.11-GCCcore-8.2.0, zlib/1.2.11-GCCcore-9.3.0, zlib/1.2.11-GCCcore-10.2.0, zlib/1.2.11-GCCcore-10.3.0, zlib/1.2.11-GCCcore-11.2.0, zlib/1.2.11, ... | zlib is designed to be a free, general-purpose, legally unencumbered -- that is, not covered by any patents -- lossless data-compression library for use on virtually any computer hardware and operating system. |
| zstd: zstd/1.4.5-GCCcore-10.2.0, zstd/1.4.9-GCCcore-10.3.0, zstd/1.5.0-GCCcore-11.2.0, zstd/1.5.2-GCCcore-11.3.0, zstd/1.5.2-GCCcore-12.2.0, zstd/1.5.6-GCCcore-13.3.0 | Zstandard is a real-time compression algorithm, providing high compression ratios. It offers a very wide range of compression/speed trade-off, while being backed by a very fast decoder. It also offers a special mode for small data, called dictionary compression, and can create dictionaries from any sample set. |